Package: popEpi 0.4.12
popEpi: Functions for Epidemiological Analysis using Population Data
Enables computation of epidemiological statistics, including those where counts or mortality rates of the reference population are used. Currently supported: excess hazard models (Dickman, Sloggett, Hills, and Hakulinen (2012) <doi:10.1002/sim.1597>), rates, mean survival times, relative/net survival (in particular the Ederer II (Ederer and Heise (1959)) and Pohar Perme (Pohar Perme, Stare, and Esteve (2012) <doi:10.1111/j.1541-0420.2011.01640.x>) estimators), and standardized incidence and mortality ratios, all of which can be easily adjusted for by covariates such as age. Fast splitting and aggregation of 'Lexis' objects (from package 'Epi') and other computations achieved using 'data.table'.
Authors:
popEpi_0.4.12.tar.gz
popEpi_0.4.12.zip(r-4.5)popEpi_0.4.12.zip(r-4.4)popEpi_0.4.12.zip(r-4.3)
popEpi_0.4.12.tgz(r-4.4-any)popEpi_0.4.12.tgz(r-4.3-any)
popEpi_0.4.12.tar.gz(r-4.5-noble)popEpi_0.4.12.tar.gz(r-4.4-noble)
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popEpi.pdf |popEpi.html✨
popEpi/json (API)
NEWS
# Install 'popEpi' in R: |
install.packages('popEpi', repos = c('https://finnishcancerregistry.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/finnishcancerregistry/popepi/issues
- ICSS - Age standardisation weights from the ICSS scheme.
- meanpop_fi - Mean population counts in Finland year, sex, and age group.
- popmort - Population mortality rates in Finland 1951 - 2013 in 101 age groups and by gender. This is an example of a population hazard table as used in 'popEpi'; for the general help page, see 'pophaz'.
- sibr - Sibr - a simulated cohort of Finnish female breast cancer patients
- sire - Sire - a simulated cohort of Finnish female rectal cancer patients
- stdpop101 - World standard population by 1 year age groups from 1 to 101. Sums to 100 000.
- stdpop18 - Standard populations from 2000: world, Europe and Nordic.
adjust-estimatesage-adjustingdirect-adjustingepidemiologyindirect-adjustingsurvival
Last updated 6 months agofrom:9041b96e37. Checks:OK: 3 NOTE: 2 ERROR: 2. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 04 2024 |
R-4.5-win | NOTE | Nov 04 2024 |
R-4.5-linux | NOTE | Nov 04 2024 |
R-4.4-win | OK | Nov 04 2024 |
R-4.4-mac | OK | Nov 04 2024 |
R-4.3-win | ERROR | Nov 04 2024 |
R-4.3-mac | ERROR | Nov 04 2024 |
Exports:adjustaggreall_names_presentarray_to_long_dfarray_to_long_dtarray_to_ratetableas.aggrecast_simplecut_boundexpr.by.cjfac2numget.yrsis_leap_yearis.DateLexis_fpalexpandlong_df_to_arraylong_df_to_ratetablelong_dt_to_arraylong_dt_to_ratetablelower_boundltablena2zeropoisson.ciprepExporaterate_ratioratetable_to_arrayratetable_to_long_dfratetable_to_long_dtrelpoisrelpois_agrobust_valuesrpcurveRPLsetaggresetcolsnullsirsir_agsir_expsir_lexsir_ratiosirsplinesplitLexisDTsplitMultiSurvsurvmeansurvtabsurvtab_agtry2int
Dependencies:clicmprskdata.tabledplyrEpietmfansigenericsgluelatticelifecyclemagrittrMASSMatrixmgcvnlmenumDerivpillarpkgconfigplyrR6RcppRcppArmadillorlangsurvivaltibbletidyselectutf8vctrswithrzoo